QSPR/QSAR Studies of 2-Furylethylenes Using Bond-Level Quadratic Indices and Comparison with Other Computational Approaches

Authors

  • Eugenio R. Martinez Albelo 1, 2. Central University of Las Villas
  • Yovani Marrero Ponce 1. Central University of Las Villas 2. Universitat de València
  • Stephen J. Barigye Central University of Las Villas
  • Yunaimy Echeverría-Díaz Central University of Las Villas
  • Facundo Pérez-Giménez Universitat de València

DOI:

https://doi.org/10.29356/jmcs.v57i1.239

Keywords:

TOMOCOMD-CARDD Software, non-Stochastic and Stochastic Bond-Based Quadratic Indices, Edge-Adjacency Matrix, Stochastic Matrix, QSPR/QSAR Model, 2-furylethylene

Abstract

The recently introduced, non-stochastic and stochastic quadratic indices (Marrero-Ponce et al. J. Comp. Aided Mol. Des. 2006, 20, 685-701) were applied to QSAR/QSPR studies of heteroatomic molecules. These novel bond-based molecular descriptors (MDs) were used for the prediction of the partition coefficient (log P), and the antibacterial activity of 34 derivatives of 2-furylethylenes. Two statistically significant QSPR models using non-stochastic and stochastic bond-based quadratic indices were obtained (R2 = 0.971, s = 0.137 and R2 = 0.986, s = 0.096). These models showed good stability to data variation in leave-one-out (LOO) cross-validation experiment (q2 = 0.9975, sCV = 0.164 and q2 = 0.947, sCV = 0.114). The best two discriminant models computed using the non-stochastic and stochastic molecular descriptors had globally good classification of 94.12% in the training set. The external prediction sets had accuracies of 100% in both cases. The comparison with other approaches (edge- and vertexbased connectivity indices, total and local spectral moments, quantum chemical descriptors as well as with other TOMOCOMD-CARDD MDs) revealed the good performance of our method in this QSPR study. The obtained results suggest that it is possible to obtain a good estimation of physical, chemical and physicochemical properties for organic compounds with the present approach.

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Author Biographies

Eugenio R. Martinez Albelo, 1, 2. Central University of Las Villas

  1. Faculty of Chemistry-Pharmacy
  2. Unit of Computer-Aided Molecular ‘Biosilico’ Discovery and Bioinformatic Research (CAMD-BIR Unit), Faculty of Chemistry-Pharmacy

Yovani Marrero Ponce, 1. Central University of Las Villas 2. Universitat de València

  1. Unit of Computer-Aided Molecular ‘Biosilico’ Discovery and Bioinformatic Research (CAMD-BIR Unit), Faculty of Chemistry-Pharmacy
  2. Unidad de Investigación de Diseño de Fármacos y Conectividad Molecular, Departamento de Química Física, Facultad de Farmacia

Stephen J. Barigye, Central University of Las Villas

Unit of Computer-Aided Molecular ‘Biosilico’ Discovery and Bioinformatic Research (CAMD-BIR Unit), Faculty of Chemistry-Pharmacy

Yunaimy Echeverría-Díaz, Central University of Las Villas

Unit of Computer-Aided Molecular ‘Biosilico’ Discovery and Bioinformatic Research (CAMD-BIR Unit), Faculty of Chemistry-Pharmacy

Facundo Pérez-Giménez, Universitat de València

Unidad de Investigación de Diseño de Fármacos y Conectividad Molecular, Departamento de Química Física, Facultad de Farmacia

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Published

2017-10-12

Issue

Section

Regular Articles